Functional divergence of the rapidly evolving miR-513 subfamily in primates

BACKGROUND: The miR-513 subfamily belongs to an X-linked primate-specific miR506-514 cluster. Across primate species, there have been several duplication events and different species each possess a variety of miR-513 copies, indicating it underwent rapid evolution. Evidence suggests that this subfamily is preferentially expressed in the testis, but otherwise, to date, the evolutionary history and functional significance of this miRNA subfamily has remained largely unexplored. RESULTS: We analyzed the evolutionary pattern of gene duplications and their functional consequence for the miR-513 subfamily in primates. Sequence comparisons showed that the duplicated copies of miR-513 were derived from transposable element (MER91C). Moreover, duplication events of the miR-513 subfamily seem to have occurred independently in Platyrrhini (New World monkeys) and Catarrhini (Old World monkeys, apes and humans) after they diverged. Different copies of the miR-513 subfamily (miR-513a/b/c) have different seed sequences, due to after-duplication sequence divergences, which eventually led to functional divergences. The results of functional assays indicated that miR-513b could inhibit the expression of its target gene, the down-regulator of transcription 1 (DR1) at both the mRNA and protein levels. In the developing testis of rhesus macaques, we observed a temporal coupling of expression levels between miR-513b and DR1, suggesting that miR-513b could affect male sexual maturation by negatively regulating the development-stage related functioning of DR1. CONCLUSIONS: The miR-513 subfamily underwent multiple independent gene duplications among five different lineages of primates. The after-duplication sequence divergences among the different copies of miR-513 led to functional divergence of these copies in primates

Highly Coordinated Gene Regulation in Mouse Skeletal Muscle Regeneration

Mammalian skeletal muscles are capable of regeneration after injury. Quiescent satellite cells are activated to reenter the cell cycle and to differentiate for repair, recapitulating features of myogenesis during embryonic development. To understand better the molecular mechanism involved in this process in vivo, we employed high density cDNA microarrays for gene expression profiling in mouse tibialis anterior muscles after a cardiotoxin injection. Among 16,267 gene elements surveyed, 3,532 elements showed at least a 2.5-fold change at one or more time points during a 14-day time course. Hierarchical cluster analysis and semiquantitative reverse transcription-PCR showed induction of genes important for cell cycle control and DNA replication during the early phase of muscle regeneration. Subsequently, genes for myogenic regulatory factors, a group of imprinted genes and genes with functions to inhibit cell cycle progression and promote myogenic differentiation, were induced when myogenic stem cells started to differentiate. Induction of a majority of these genes, including E2f1 and E2f2, was abolished in muscles lacking satellite cell activity after gamma radiation. Regeneration was severely compromised in E2f1 null mice but not affected in E2f2 null mice. This study identifies novel genes potentially important for muscle regeneration and reveals highly coordinated myogenic cell proliferation and differentiation programs in adult skeletal muscle regeneration in vivo

Role of Mineral Nutrients in Plant-Mediated Synthesis of Three-Dimensional Porous LaCoO3

With the assistance of plant extracts, the facile synthesis of three-dimensional (3D) porous LaCoO3 perovskite is reported at a lower calcination temperature of 500 °C. The formation mechanism is carefully studied by investigating the different roles of organic and inorganic components in Cacumenplatycladi extract. The results indicate that organic components (mainly phenolic acids) function as the similar complex species of citric acid, while the mineral nutrients (Na+, K+, Ca2+, and Mg2+) together with NO3– serve as combustion-aid agents even with trace amounts. Moreover, the biosynthesized LaCoO3 has a high surface area of 32.5 m2 g–1 and exhibits excellent catalytic performance for benzene oxidation. Benzene of 1000 ppm can achieve a stable conversion above 90% at 285 °C in a continuous run for 80 h (weight-hourly space velocity (WHSV) = 40 000 mL g–1 h–1). It can be attributed to the bio-LaCoO3 with more electrophilic adsorption of oxygen species and 3D porous structure

General synthesis of transition metal oxide ultrafine nanoparticles embedded in hierarchically porous carbon nanofibers as advanced electrodes for lithium storage

A unique general, large-scale, simple, and cost-effective strategy, i.e., foaming-assisted electrospinning, for fabricating various transition metal oxides into ultrafine nanoparticles (TMOs UNPs) that are uniformly embedded in hierarchically porous carbon nanofibers (HPCNFs) has been developed. Taking advantage of the strong repulsive forces of metal azides as the pore generator during carbonization, the formation of uniform TMOs UNPs with homogeneous distribution and HPCNFs is simultaneously implemented. The combination of uniform ultrasmall TMOs UNPs with homogeneous distribution and hierarchically porous carbon nanofibers with interconnected nanostructure can effectively avoid the aggregation, dissolution, and pulverization of TMOs, promote the rapid 3D transport of both Li ions and electrons throughout the whole electrode, and enhance the electrical conductivity and structural integrity of the electrode. As a result, when evaluated as binder-free anode materials in Li-ion batteries, they displayed extraordinary electrochemical properties with outstanding reversible capacity, excellent capacity retention, high Coulombic efficiency, good rate capability, and superior cycling performance at high rates. More importantly, the present work opens up a wide horizon for the fabrication of a wide range of ultrasmall metal/metal oxides distributed in 1D porous carbon structures, leading to advanced performance and enabling their great potential for promising large-scale applications

Preliminary evidence for 17 coastal terraces on Fildes Peninsula, King George Island, Antarctica

This study confirms the presence of 17 coastal terraces on Fildes Peninsula, Antarctica based on field observations and grain size analysis. The terraces formed by isostatic uplift during climate warming and glacier melting, and each level corresponds to a relatively stable period of climate. The grain size characteristics indicate an overlapping sedimentary origin for the sediments on the coastal terraces. The consistency of regional sea level rise, climate change, and glacial area suggest the presence of similar coastal terraces on King George Island since 18.0 ka

Pyrolyzing soft template-containing poly(ionic liquid) into hierarchical N-doped porous carbon for electroreduction of carbon dioxide

Heteroatom-doped carbon materials have demonstrated great potential in the electrochemical reduction reaction of CO2 (CO2RR) due to their versatile structure and function. However, rational structure control remains one challenge. In this work, we reported a unique carbon precursor of soft template-containing porous poly(ionic liquid) (PIL) that was directly synthesized via free-radical self-polymerization of ionic liquid monomer in a soft template route. Variation of the carbonization temperature in a direct pyrolysis process without any additive yielded a series of carbon materials with facile adjustable textural properties and N species. Significantly, the integration of soft-template in the PIL precursor led to the formation of hierarchical porous carbon material with a higher surface area and larger pore size than that from the template-free precursor. In CO2RR to CO, the champion catalyst gave a Faraday efficiency of 83.0% and a current density of 1.79 mA?cm?2 at ?0.9 V vs. reversible hydrogen electrode (vs. RHE). The abundant graphite N species and hierarchical pore structure, especially the unique hierarchical small-/ultra-micropores were revealed to enable better CO2RR performance

Graphene-wrapped reversible reaction for advanced hydrogen storage

Here, we report the fabrication of a graphene-wrapped nanostructured reactive hydride composite, i.e., 2LiBH4-MgH2, made by adopting graphene-supported MgH2 nanoparticles (NPs) as the nanoreactor and heterogeneous nucleation sites. The porous structure, uniform distribution of MgH2 NPs, and the steric confinement by flexible graphene induced a homogeneous distribution of 2LiBH4-MgH2 nanocomposite on graphene with extremely high loading capacity (80 wt%) and energy density. The well-defined structural features, including even distribution, uniform particle size, excellent thermal stability, and robust architecture endow this composite with significant improvements in its hydrogen storage performance. For instance, at a temperature as low as 350 °C, a reversible storage capacity of up to 8.9 wt% H2, without degradation after 25 complete cycles, was achieved for the 2LiBH4-MgH2 anchored on graphene. The design of this three-dimensional architecture can offer a new concept for obtaining high performance materials in the energy storage field

DNA Checkpoint and Repair Factors Are Nuclear Sensors for Intracellular Organelle Stresses-Inflammations and Cancers Can Have High Genomic Risks.

Under inflammatory conditions, inflammatory cells release reactive oxygen species (ROS) and reactive nitrogen species (RNS) which cause DNA damage. If not appropriately repaired, DNA damage leads to gene mutations and genomic instability. DNA damage checkpoint factors (DDCF) and DNA damage repair factors (DDRF) play a vital role in maintaining genomic integrity. However, how DDCFs and DDRFs are modulated under physiological and pathological conditions are not fully known. We took an experimental database analysis to determine the expression of 26 DNA D

A combined hydrogen storage system of Mg(BH4)(2)-LiNH2 with favorable dehydrogenation

The decomposition properties of Mg(BH4)2−LiNH2 mixtures were investigated. Apparent NH3 release appeared from 50 to 300 °C for the Mg(BH4)2−LiNH2 mixtures with mole ratios of 1:1.5, 1:2, and 1:3, while only hydrogen release was detected for the mixture with a mole ratio of 1:1. In the case of the Mg(BH4)2−LiNH2 (1:1) sample, the onset of the first-step dehydrogenation starts at 160 °C, with a weight loss of 7.2 wt % at 300 °C, which is improved significantly compared to the pure Mg(BH4)2 alone. From Kissinger’s method, the activation energy, Ea, for the first and second step dehydrogenation in Mg(BH4)2−LiNH2 (1:1) was estimated to be about 121.7 and 236.6 kJ mol−1, respectively. The improved dehydrogenation in the combined system may be ascribed to a combination reaction between [BH4] and [NH2], resulting in the formation of Li−Mg alloy and amorphous B−N compound

Clean process to utilize the potassium-containing phosphorous rock with simultaneous HCl and KCl production via the steam-mediated reactions

In this paper, a clean process based on the steam-mediated reactions for simultaneous HCl and KCl production using the potassium (K)-containing phosphorous rock as a precursor is proposed. Through hydrochloric acid (HCl) leaching, not only the generation of H3PO4and CaCl2 (via further precipitation) were realized but also the acid-insoluble residue [phosphorous-rock slag (PS)] rich in elements, that is, K, Al, Si, and so on, in the form of microcline (KAlSi3O8) and quartz (SiO2) was obtained and became readily available for further HCl and KCl generation. Over 95 % of the elements, that is, K, Al, and Si, come into the final products, and the overall acid consumption (based on HCl) is significantly reduced (90%) due to recovery of acids. The impacts of the key operational parameters such as temperature, duration, and reagent impregnate ratio were rigorously analyzed via a supervised machine learning approach, and the optimal conditions were determined [reaction temperature, X1, 850 °C; reaction duration, X2, 40 min; and impregnate ratio (PS over CaCl2), X3, 2.5] with approximately ± 10% uncertainties. Thermodynamic analysis indicates that the introduction of steam to PS + CaCl2 not only enhances the chemical potential for the formation of HCl and KCl but also provides the transport advantage in continuously removing the generated products, that is, HCl and KCl, out of the system. Molecular simulation indicates that the presence of both steam and SiO2 in the PS matrix plays critical roles in decomposing PS + CaCl2 at high temperature. The shrinking core model shows that both the intrinsic kinetics and transport are influential with the activation energy being around 14.63 kJ/mol. The potential reaction pathway is postulated